Thanks again! Used the suggested changes and took LdeRaad's suggestion about changing model.ageing to TRUE. Output was as below but got Warning message below.
Thoughts? Also please see notes below re map.
Calibration.periods <- data.frame(calibration.start = as.POSIXct("2014-07-06"),
calibration.stop = as.POSIXct("2014-08-01"),
lon = CapLocs,
lat = CapLocs)
#create a calibration object
Calibration<-make.calibration(Proc.data = Light.Data,
Calibration.periods = Calibration.periods,
model.ageing = TRUE,
plot.each = FALSE,
plot.final = FALSE)
checking dawn 1 checking dawn 2 checking dawn 3 checking dawn 4 checking dawn 5 checking dawn 6 checking dawn 7 checking dawn 8 checking dawn 9 checking dawn 10 checking dawn 11 checking dawn 12 checking dawn 13 checking dawn 14
#(etc, etc, I trimmed this)
calibration method used: parametric.slope
likelihood correction switched to TRUE
simulation: 0% simulation: 1% simulation: 1% simulation: 1% simulation: 2% simulation: 2% simulation: 2% simulation: 3% simulation:
#(etc etc, I trimmed this)
In get.calibration.parameters(Calibration.periods, Proc.data, model.ageing = model.ageing, :
you have only one calibration period ageing estimation is unreliable and should be turned ot F!!!
Also, when I tried to plot a simple map
#Plot a simple map
got this error:
Error in f(...) : could not find function "viewport"
Looked this up at http://stat.ethz.ch/R-manual/R-devel/library/grid/html/viewport.html
but really wasn't sure what to do here. Any suggestions anyone?